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Introductory Heterocyclic Chemistry

Peter A. Jacobi

Dartmouth College
New Hampshire, United States

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Dedication

In tribute to Ted, whose fascination with heterocyclic chemistry was boundless—a treasured friend, and an inspiring mentor to generations of heterocyclic chemists

Preface

Why heterocycles? Why has Nature chosen these ring systems as a foundation for so many of her life processes? And why have organic chemists focused so much effort on understanding and synthesizing these materials? One reason is that heterocyclic rings (i.e. those containing atoms other than carbon) are present in the majority of known natural products, contributing to enormous structural diversity. In addition, they often possess significant biological activity. Medicinal chemists have embraced this last property in designing most of the small molecule drugs in use today. Indeed, a 2014 study found that nearly 60% of all FDA‐approved drugs in this category incorporate a nitrogen heterocycle (totaling some 640!).* Oxygen and sulfur heterocycles are also well represented.

The chemistry of these substances is quite different from that encountered in carbocyclic systems, and an appreciation of these differences is important for understanding biochemistry and molecular biology at a fundamental level. Also, it is not unusual for heterocyclic species to undergo rearrangements and transformations having no parallel in carbocyclic chemistry, which provides a good training ground for sharpening mechanistic skills.

This leads to the question of at what level should the study of heterocyclic chemistry begin. It is fair to say that most courses in this area are geared toward graduate education, at least in the U.S. But this need not be the case, and the author has many years of experience teaching this material at the junior and senior undergraduate level. This text builds upon that experience, and it should be appropriate for introducing this topic to aspiring heterocyclic chemists at various stages of their careers. It should also find use as a resource for chemists in related fields who simply wish to “test the waters” of heterocyclic chemistry.

* Vitaku, E.; Smith, D. T.; Njardarson, J.T. J. Med. Chem. 2014, 57, 10257-10274.

Acknowledgments

The author is indebted to my good friend and colleague, Professor Gordon W. Gribble, for reading and commenting on the entire text. A special thanks is also due to Ms. Lora C. Leligdon, of Kresge Library, Dartmouth College, for her invaluable aid in tracking down innumerable references. And finally, I am grateful to my dear wife Lee Ann, who, although not a chemist persevered through the entire project and served as proofreader extraordinaire.